grandR (Q73478)
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Comprehensive Analysis of Nucleotide Conversion Sequencing Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
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| English | grandR |
Comprehensive Analysis of Nucleotide Conversion Sequencing Data |
Statements
14 January 2026
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Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data. Fast Wilcoxon tests are supported via the 'presto' package (available at <https://github.com/immunogenomics/presto>).
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