phylter (Q73603)
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Detect and Remove Outliers in Phylogenomics Datasets
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | phylter |
Detect and Remove Outliers in Phylogenomics Datasets |
Statements
24 August 2023
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Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identifywhat species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.
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expanded from: GPL (≥ 2) (English)
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Damien M. de Vienne
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Stéphane Dray
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Théo Tricou
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