HaploVar (Q7371561)
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Defining Local Haplotype Variants for Use in Trait Association and Trait Prediction Analyses
| Language | Label | Description | Also known as |
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| default for all languages | No label defined |
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| English | HaploVar |
Defining Local Haplotype Variants for Use in Trait Association and Trait Prediction Analyses |
Statements
A local haplotyping tool for use in trait association and trait prediction analyses pipelines. 'HaploVar' enables users take single nucleotide polymorphisms (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the output to be compatible with a wide range of trait association and trait prediction tools. The local haplotypes are calculated from the LD matrix using a clustering algorithm called density-based spatial clustering of applications with noise (DBSCAN) (Ester et al., 1996) <ISBN: 1577350049>.
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7 September 2026
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