tidyGenR (Q7380586)
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Tidy Multilocus Amplicon Genotypes
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
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| English | tidyGenR |
Tidy Multilocus Amplicon Genotypes |
Statements
Variant determination and genotyping from high throughput sequences from multilocus amplicon libraries, typically sequenced in Illumina MiSeq or similar. It provides a set of core functions for the central steps: demultiplex by locus, truncate reads, variant calling, and genotype calling. Additionally, it provides a set of functions for diagnosis and estimation of best running parameters and multiple extensions for genotype/variants manipulation and reformatting. Output variants and genotypes are output in 'tidy' format, thus facilitating reformatting, manipulation and potential connection to other R packages.
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17 February 2026
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