Rediscover (Q87435)

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Identify Mutually Exclusive Mutations
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    Rediscover
    Identify Mutually Exclusive Mutations

      Statements

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      0.3.2
      14 April 2023
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      PACKAGES.rds
      9 July 2026
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      0.1.0
      7 April 2021
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      0.2.0
      8 July 2021
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      0.3.0
      6 October 2021
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      0.3.1
      12 February 2023
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      0.3.3
      19 December 2025
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      19 December 2025
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      An optimized method for identifying mutually exclusive genomic events. Its main contribution is a statistical analysis based on the Poisson-Binomial distribution that takes into account that some samples are more mutated than others. See [Canisius, Sander, John WM Martens, and Lodewyk FA Wessels. (2016) "A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence." Genome biology 17.1 : 1-17. <doi:10.1186/s13059-016-1114-x>]. The mutations matrices are sparse matrices. The method developed takes advantage of the advantages of this type of matrix to save time and computing resources.
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      Laura Jareno
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      Angel Rubio
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