nanostringr (Q99583)
From MaRDI portal
Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | nanostringr |
Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data |
Statements
15 August 2023
0 references
Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
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