jointseg

MaRDI QIDQ1353063swMATHCRANFDO

Authors Morgane Pierre-jean, Pierre Neuvial, Guillem Rigaill

Last update 14 May 2025

Copyright license GNU Lesser General Public License, version 2.1, GNU Lesser General Public License, version 3.0

Software version identifier 1.0.2, PACKAGES.rds, 1.0.0, 1.0.1, 1.0.3

Official website https://cran.r-project.org/web/packages/jointseg/index.html

Source code repository https://github.com/cran/jointseg

Description

Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.

Cites work

• Performance evaluation of DNA copy number segmentation methods

Cited in

(6)

• CNVScope
• Detecting possibly frequent change-points: wild binary segmentation 2 and steepest-drop model selection
• leapp
• SegCorr
• IDetect
• FarmTest

This page was built for software: jointseg