kpcaIG

Authors Mitja Briscik, Mohamed Heimida, Sébastien Déjean

Last update 28 March 2025

Copyright license GNU General Public License, version 3.0

Software version identifier PACKAGES.rds, 1.0, 1.0.1

Description

The kernelized version of principal component analysis (KPCA) has proven to be a valid nonlinear alternative for tackling the nonlinearity of biological sample spaces. However, it poses new challenges in terms of the interpretability of the original variables. 'kpcaIG' aims to provide a tool to select the most relevant variables based on the kernel PCA representation of the data as in Briscik et al. (2023) <doi:10.1186/s12859-023-05404-y>. It also includes functions for 2D and 3D visualization of the original variables (as arrows) into the kernel principal components axes, highlighting the contribution of the most important ones.

Cites work

Improvement of variables interpretability in kernel PCA

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