Large Scale Matching for Position Weight Matrices

DOI10.1007/11780441_36MaRDI QIDQ5307523zbMATH OpenOpenAlexFDO

Authors Aude Liefooghe, H. Touzet, Jean-Stéphane Varré

Publication date 14 September 2007

Published in Combinatorial Pattern Matching (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11780441_36

Mathematics Subject Classification ID

Nonnumerical algorithms (68W05) Algorithms on strings (68W32) Computational methods for problems pertaining to biology (92-08)

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Cited in

(6)

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• Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching
• Motif matching using gapped patterns
• scientific article; zbMATH DE number 2087052 (Why is no real title available?)
• Seed-driven learning of position probability matrices from large sequence sets
• Fast profile matching algorithms - A survey

Describes a project that uses

Uses Software

• TFMPvalue

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