Local connectivity of neutral networks

DOI10.1007/S11538-008-9356-8MaRDI QIDQ841796zbMATH OpenOpenAlexWikidataFDO

Authors Christian M. Reidys

Publication date 18 September 2009

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-008-9356-8

zbMATH Keywords

neutral evolutionpseudoknot structurerandom graphsecondary structurethreshold value

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40)

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Cites work

• Asymptotic enumeration of RNA structures with pseudoknots
• Central and local limit theorems for RNA structures
• Combinatorial design of pseudoknot RNA
• Combinatorics of RNA Hairpins and Cloverleaves
• Combinatorics of RNA secondary structures
• Combinatorics of RNA structures with pseudoknots
• Computation of Generating Functions for Biological Molecules
• Crossings and nestings in tangled diagrams
• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
• Evolution in a flat fitness landscape
• Generic properties of combinatory maps: Neutral networks of RNA secondary structures
• scientific article; zbMATH DE number 3675903 (Why is no real title available?)
• scientific article; zbMATH DE number 1870235 (Why is no real title available?)
• Linear trees and RNA secondary structure
• Poisson approximation for large deviations
• Random induced subgraphs of generalized \(n\)-cubes
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• Spaces of RNA secondary structures
• Statistics of canonical RNA pseudoknot structures
• The method of Darboux
• Tree adjoining grammars for RNA structure prediction

Cited in

(5)

• Generic properties of combinatory maps: Neutral networks of RNA secondary structures
• An \textit{in silico} exploration of the neutral network in protein sequence space
• scientific article; zbMATH DE number 874694 (Why is no real title available?)
• Local dependency in networks
• Eigenvalues of neutral networks: interpolating between hypercubes

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