mappoly

MaRDI QIDQ83256CRANFDO

Authors Marcelo Mollinari, Gabriel Gesteira, Cristiane Taniguti, Jeekin Lau

Last update 12 January 2026

Copyright license GNU General Public License, version 3.0

Software version identifier 0.3.3, 0.2.0, 0.2.1, 0.2.3, 0.3.0, 0.3.1, 0.3.2, 0.4.0, PACKAGES.rds, 0.4.0, 0.4.1, 0.4.2

Description

Constructs genetic linkage maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologous chromosomes. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). Methods are described in Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Cites work

• Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models
• Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping

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