mappoly

MaRDI QIDQ83256CRANFDO

Authors Jeekin Lau, Gabriel Gesteira, Cristiane Taniguti, Marcelo Mollinari

Last update 17 February 2024

Copyright license GNU General Public License, version 3.0

Software version identifier 0.3.3, 0.2.0, 0.2.1, 0.2.3, 0.3.0, 0.3.1, 0.3.2, 0.4.0

Description

Construction of genetic maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologous chromosomes. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). For more detail, please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Cites work

• Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models
• Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping

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