Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

DOI10.1073/PNAS.081068098MaRDI QIDQ2710165zbMATH OpenOpenAlexWikidataFDO

Authors Peter Beerli, Joseph Felsenstein

Publication date 18 April 2001

Published in Proceedings of the National Academy of Sciences of the United States of America (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.081068098

zbMATH Keywords

coalescence theoryMetropolis-Hastings algorithmpopulation genetics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical analysis or methods applied to Markov chains (65C40) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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Cites work

• Inference from gene trees in a subdivided population
• Minimal Mutation Trees of Sequences
• Properties of a neutral allele model with intragenic recombination
• Risk models in genetic epidemiology
• The coalescent

Cited in

(17)

• Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
• Evolution in heterogeneous populations: from migration models to fixation probabilities
• Genetic diversity of microsatellite loci in hierarchically structured populations
• Exact limits of inference in coalescent models
• No BLUE among phylogenetic estimators
• Inference of gene flow in the process of speciation: efficient maximum-likelihood implementation of a generalised isolation-with-migration model
• Stability of financial market driven by information delay and liquidity in delay agent-based model
• Demographic inference under the coalescent in a spatial continuum
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
• Dynamic forecasting performance and liquidity evaluation of financial market by econophysics and Bayesian methods
• Feasible sets for a migration model
• Structured coalescent with nonconservative migration
• scientific article; zbMATH DE number 7008406 (Why is no real title available?)
• Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
• Brownian models and coalescent structures
• Corridors for migration between large subdivided populations, and the structured coalescent
• The combinatorics of discrete time-trees: theory and open problems

Describes a project that uses

Uses Software

• Genetree

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