MergeMaid: R Tools for Merging and Cross-Study Validation of Gene Expression Data

DOI10.2202/1544-6115.1046MaRDI QIDQ5700474zbMATH OpenOpenAlexWikidataFDO

Authors Xiaogang Zhong, Elizabeth S. Garrett, Leslie Cope, Giovanni Parmigiani

Publication date 28 October 2005

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://biostats.bepress.com/cgi/viewcontent.cgi?article=1053&context=jhubiostat, http://www.bepress.com/sagmb/vol3/iss1/art29/

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Recommendations

• Cross-study validation and combined analysis of gene expression microarray data
• On integrating multi-experiment microarray data
• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• A Bayesian Model for Cross-Study Differential Gene Expression
• Methods for re-using public gene expression data

Cited in

(4)

• Methods for re-using public gene expression data
• MergeMaid
• Multi-way blockmodels for analyzing coordinated high-dimensional responses
• scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Describes a project that uses

Uses Software

• R

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