metaGE

Authors Annaïg de Walsche, Tristan Mary-Huard

Last update 28 September 2023

Copyright license GNU General Public License, version 3.0

Software version identifier 1.0.0, 1.0.1, 1.0.2, 1.0.3

Meta-analysis of genome-wide association studies for studying Genotype x Environment interactions. The 4 main functions of the package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test() correspond to 4 steps to perform the meta-analysis: Collecting the results of genome-wide association studies data from different files; Inferring the inter-environment correlation matrix; Performing global test procedure for quantitative trait loci detection (using a Fixed or Random effect model); Performing tests of contrast or meta-regression using an environmental co-factor. (De Walsche, A., et al. (2023) <doi:10.1101/2023.03.01.530237>).

Cites work

metaGE: Investigating Genotype × Environment interactions through meta-analysis

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