MicrobiomeStat

MaRDI QIDQ60765CRANFDO

Authors Jun Chen, Xianyang Zhang

Last update 3 March 2026

Copyright license GNU General Public License, version 3.0

Software version identifier 1.1, 1.0, 1.2, 1.3, PACKAGES.rds, 1.4

Description

A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects. Includes the LinDA method for differential abundance analysis (Zhou et al. (2022)<doi:10.1186/s13059-022-02655-5>), the BMDD (Bimodal Dirichlet Distribution) method for accurate modeling and imputation of zero-inflated microbiome sequencing data (Zhou et al. (2025)<doi:10.1371/journal.pcbi.1013124>) and compositional sparse CCA methods for microbiome multi-omics data integration (Deng et al. (2024) <doi:10.3389/fgene.2024.1489694>).

Cites work

• BMDD: A probabilistic framework for accurate imputation of zero-inflated microbiome sequencing data
• LinDA: linear models for differential abundance analysis of microbiome compositional data
• Structure-adaptive canonical correlation analysis for microbiome multi-omics data

Cited in

(1)

• ggpicrust2

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