Microsatellite evolution: Markov transition functions for a suite of models

DOI10.1016/J.TPB.2006.10.001MaRDI QIDQ885382zbMATH OpenOpenAlexWikidataFDO

Authors Joseph C. Watkins

Publication date 13 June 2007

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2006.10.001

zbMATH Keywords

Markov processGenerating functionsMicrosatellites

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) PDEs in connection with biology, chemistry and other natural sciences (35Q92)

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Cites work

• scientific article; zbMATH DE number 3650737 (Why is no real title available?)
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• scientific article; zbMATH DE number 964178 (Why is no real title available?)
• scientific article; zbMATH DE number 3107995 (Why is no real title available?)
• Inference in Molecular Population Genetics
• Sampling distribution for microsatellites amplified by PCR: mean field approximation and its applications to genotyping
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models

Cited in

(13)

• Markov models for accumulating mutations
• The distribution of coalescence times and distances between microsatellite alleles with changing effective population size
• Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis
• Inference on microsatellite mutation processes in the invasive mite, varroa destructor, using reversible jump Markov chain Monte Carlo
• On the size distribution of private microsatellite alleles
• Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
• Statistics for microsatellite variation based on coalescence
• The SMM model as a boundary value problem using the discrete diffusion equation
• Microsatellite mutations during the polymerase chain reaction: mean field approximations and their applications
• A microscopic interpretation for adaptive dynamics trait substitution sequence models
• Comparison between two approaches to modeling microsatellite DNA repeats: infinite dimensional model and its \(n\)-dimensional approximation
• A Markov chain description of the stepwise mutation model: local and global behaviour of the allele process
• A new stochastic model of microsatellite evolution

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