uni uni reaction (ODE model)

Community: MathModDB

continuous-time model	deterministic model	dimensional model	dynamic model	mathematical model	nonlinear model

Available identifiers

MaRDI QIDQ6675446

uni uni reaction model

Description

Ordinary differential equations for the rates of change of all chemical species (substrate, enzyme, enzyme-substrate complex, product) in an Uni Uni reaction. kᵢ with positive or negative i represents the rate constant of the forward- or backward-reaction i-th reaction step.

List of contained entities

enzyme conservation	$c_{E_{0}} = c_{E} + c_{E X}$
	$c_{E X}$ represents complexed enzyme concentration
	$c_{E_{0}}$ represents enzyme concentration
	$c_{E}$ represents enzyme concentration

initial enzyme - substrate - complex concentration (uni uni reaction - ODE model)	$c_{E S} (t = 0) = c_{{E S}_{0}}$	initial condition
	$c_{E S}$ represents enzyme-substrate complex concentration
	$t$ represents time

initial enzyme concentration (uni uni reaction - ODE model)	$c_{E} (t = 0) = c_{E_{0}}$	initial condition
	$c_{E}$ represents concentration
	$t$ represents time

initial product concentration (uni uni reaction - ODE model)	$c_{P} (t = 0) = c_{P_{0}}$	initial condition
	$c_{P}$ represents product concentration
	$t$ represents time

initial substrate concentration (uni uni reaction - ODE model)	$c_{S} (t = 0) = c_{S_{0}}$	initial condition
	$c_{S}$ represents substrate concentration
	$t$ represents time

law of mass action	$v = k \prod_{i = 1}^{n} c_{i}$
	$c_{i}$ represents concentration
	$k$ represents reaction rate constant
	$n$ represents molecularity
	$v$ represents reaction rate

mass balance	$δ_{t} + \nabla F = 0$
uni uni reaction ODE system	$\begin{matrix} \frac{d c_{S}}{d t} & = - k_{1} * c_{E} * c_{S} + k_{- 1} * c_{E S} \\ \frac{d c_{P}}{d t} & = k_{2} * c_{E S} - k_{- 2} * c_{E} * c_{P} \\ \frac{d c_{E}}{d t} & = - k_{1} * c_{E} * c_{S} + k_{- 1} * c_{E S} + k_{2} * c_{E S} - k_{- 2} * c_{E} * c_{P} \\ \frac{d c_{E S}}{d t} & = k_{1} * c_{E} * c_{S} - k_{- 1} * c_{E S} - k_{2} * c_{E S} + k_{- 2} * c_{E} * c_{P} \end{matrix}$
	$\frac{d c_{E S}}{d t}$ represents reaction rate
	$\frac{d c_{E}}{d t}$ represents reaction rate
	$\frac{d c_{P}}{d t}$ represents reaction rate
	$\frac{d c_{S}}{d t}$ represents reaction rate
	$c_{E S}$ represents concentration
	$c_{E}$ represents concentration
	$c_{P}$ represents concentration
	$c_{S}$ represents concentration
	$k_{- 1}$ represents reaction rate constant
	$k_{- 2}$ represents reaction rate constant
	$k_{1}$ represents reaction rate constant
	$k_{2}$ represents reaction rate constant
	$t$ represents time

List of computational tasks

parameter estimation of enzyme kinetics
sensitivity analysis of complex kinetic systems
simulation of complex kinetic systems

Mathematical models specializing uni uni reaction (ODE model)

uni uni reaction (Eadie Hofstee model without product - irreversibility assumption)	assumes	irreversibility assumption
uni uni reaction (Eadie Hofstee model without product - rapid equilibrium assumption)	assumes	rapid equilibrium assumption
uni uni reaction (Eadie Hofstee model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction (Hanes Woolf model without product - irreversibility assumption)	assumes	irreversibility assumption
uni uni reaction (Hanes Woolf model without product - rapid equilibrium assumption)	assumes	rapid equilibrium assumption
uni uni reaction (Hanes Woolf model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction (Lineweaver Burk model without product - irreversibility assumption)	assumes	irreversibility assumption
uni uni reaction (Lineweaver Burk model without product - rapid equilibrium assumption)	assumes	rapid equilibrium assumption
uni uni reaction (Lineweaver Burk model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction (Michaelis Menten model with product - steady state assumption)	assumes	steady state assumption
uni uni reaction (Michaelis Menten model without product - irreversibility assumption)	assumes	irreversibility assumption
uni uni reaction (Michaelis Menten model without product - rapid equilibrium assumption)	assumes	rapid equilibrium assumption
uni uni reaction (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive complete inhibition (Dixon model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive complete inhibition (Eadie Hofstee model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive complete inhibition (Hanes Woolf model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive complete inhibition (Lineweaver Burk model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive complete inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction competitive partial inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed complete inhibition (Dixon model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed complete inhibition (Eadie Hofstee model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed complete inhibition (Hanes Woolf model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed complete inhibition (Lineweaver Burk model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed complete inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction mixed partial inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive complete inhibition (Dixon model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive complete inhibition (Eadie Hofstee model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive complete inhibition (Hanes Woolf model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive complete inhibition (Lineweaver Burk model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive complete inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction non-competitive partial inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive complete inhibition (Dixon model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive complete inhibition (Eadie Hofstee model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive complete inhibition (Hanes Woolf model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive complete inhibition (Lineweaver Burk model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive complete inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption
uni uni reaction uncompetitive partial inhibition (Michaelis Menten model without product - steady state assumption)	assumes	steady state assumption

Further items linking to uni uni reaction (ODE model)

Item	Property
uni uni reaction	modelled by

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