Modelling phylogeny in 16s rRNA gene sequencing datasets using string-based kernels

DOI10.1016/J.JTBI.2025.112249MaRDI QIDQ6906204zbMATH OpenFDO

Authors Jonathan Ish-Horowicz, S. Filippi

Publication date 5 November 2025

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/J.JTBI.2025.112249

zbMATH Keywords

kernel methodsmicrobiome data analysisnon-parametric statistics

Mathematics Subject Classification ID

Taxonomy, cladistics, statistics in mathematical biology (92B10) Microbiology (92C70)

Cites work

• 10.1162/153244302760200687
• A kernel two-sample test
• Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data
• Fast kernels for inexact string matching.
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• Kernel-penalized regression for analysis of microbiome data
• Permutation \(p\)-values should never be zero: calculating exact \(p\)-values when permutations are randomly drawn
• The Variational Gaussian Approximation Revisited

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