moire

Authors Maxwell Murphy, Bryan Greenhouse

Last update 26 September 2026

Copyright license GNU General Public License

Description

A Markov Chain Monte Carlo (MCMC) based approach to Bayesian estimation of individual level multiplicity of infection, within host relatedness, and population allele frequencies from polyallelic genetic data. Implements the model described in Murphy and Greenhouse (2024) <doi:10.1093/bioinformatics/btae619>.

Cites work

MOIRE: a software package for the estimation of allele frequencies and effective multiplicity of infection from polyallelic data

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