Multidimensional scaling for genomic data

DOI10.1007/978-3-319-29975-4_7MaRDI QIDQ2958617zbMATH OpenOpenAlexFDO

Authors Audronė Jakaitienė, Mara Sangiovanni, Mario Rosario Guarracino, Panos M. Pardalos

Publication date 3 February 2017

Published in Advances in Stochastic and Deterministic Global Optimization (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-29975-4_7

zbMATH Keywords

data mininggenomic datametric multidimensional scalingnon-metric multidimensional scaling

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) One- and multidimensional scaling in the social and behavioral sciences (91C15) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 5286897 (Why is no real title available?)
• scientific article; zbMATH DE number 835705 (Why is no real title available?)
• Making sense of big data
• Modern multidimensional scaling. Theory and applications.
• Multidimensional data visualization. Methods and applications
• Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
• Multidimensional scaling. I: Theory and method
• Two level minimization in multidimensional scaling

Cited in

(4)

• A combination dimensionality reduction approach to codon position patterns of eubacteria based on their complete genomes
• A multi-scale seriation algorithm for clustering sparse imbalanced data: application to spike sorting
• Optimal randomized classification trees
• Mathematical optimization in classification and regression trees

Describes a project that uses

Uses Software

• PLINK
• mothur
• bammds
• METAREP

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