NGSToolKit

Authors Sona Charles, Febin T Nabeel, T E Sheeja

Last update 12 September 2026

Copyright license GNU General Public License, version 3.0

Description

Interactive 'Shiny' web application for comprehensive RNA-Seq data analysis, quality control, differential expression analysis with 'DESeq2', dimensionality reduction (PCA, t-SNE, UMAP), clustering, and integrated 'JBrowse 2' genome visualization. For differential expression analysis methods, see Love (2014) <doi:10.1186/s13059-014-0550-8>.

Cites work

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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