NeighborFinder

Authors Mathilde Sola, Mahendra Mariadassou, Magali Berland

Last update 30 June 2026

Copyright license MIT license, File License

Description

Implementation of the local approach described in Sola et al., 2026 <doi:10.64898/2025.12.05.692507> to identify companion species of a bacteria of interest. From several abundance tables of metagenomic data, 'NeighborFinder' suggests a shortlist of companion species based on the integration of results. A visualization via a network is proposed.

Cites work

NeighborFinder: an R package inferring local microbial network around a species of interest

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