New approaches for computer analysis of nucleic acid sequences.

DOI10.1073/PNAS.80.18.5660MaRDI QIDQ3666654zbMATH OpenOpenAlexWikidataFDO

Authors Samuel Karlin, Friedemann Ost, Simon Tavaré, Laurence J. Korn, Ghassan I. Ghandour

Publication date 1983

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.80.18.5660

zbMATH Keywords

computer analysis of nucleic acid sequencesdyad symmetrieshomologyhuman papillomavirusimmunoglobulin kappa-chain geneslambda phagemitochondrial genomesnew high-speed computer algorithmpapovaviruses

Mathematics Subject Classification ID

Computing methodologies and applications (68U99) Physiological, cellular and medical topics (92Cxx)

Cited in

(17)

• An Erdős-Rényi law with shifts
• Maximal success durations for a semi-Markov process
• A survey of multiple sequence comparison methods
• Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons
• Suffix-sorting via Shannon-Fano-Elias codes
• p-suffix sorting as arithmetic coding
• A note on the longest matching consecutive subsequence
• A Phase Transition for the Distribution of Matching Blocks
• Efficient pattern matching for RNA secondary structures
• On longest matching consecutive subsequence
• Markov Additive Processes and Repeats in Sequences
• Property Suffix Array with Applications in Indexing Weighted Sequences
• Estimating primate divergence times by using conditioned birth-and-death processes
• Fast, practical algorithms for computing all the repeats in a string
• The exploitation of assembly language instructions in biological text manipulation. I: Nucleotide sequences
• General methods of sequence comparison
• An accurate approximation to the distribution of the length of the longest matching word between two random DNA sequences

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