o2geosocial

Authors Alexis Robert, Sebastian Funk, Adam Kucharski

Last update 21 June 2024

Copyright license MIT license, File License

Software version identifier 1.0.0, 1.0.1, 1.1.0, 1.1.1, PACKAGES.rds, 1.1.2, 1.1.3

Description

Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) <doi:10.1098/rsif.2020.0084>).

Cites work

Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data

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