OMGS: optical map-based genome scaffolding

DOI10.1007/978-3-030-17083-7_12MaRDI QIDQ2415267zbMATH OpenOpenAlexFDO

Authors Weihua Pan, Tao Jiang, Stefano Lonardi

Publication date 21 May 2019

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1007/978-3-030-17083-7_12

zbMATH Keywords

combinatorial optimizationde novo genome assemblyoptical mapsscaffolding

Mathematics Subject Classification ID

Combinatorial optimization (90C27) Genetics and epigenetics (92D10)

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Cited in

(4)

• OMGS
• Kermit: guided long read assembly using coloured overlap graphs
• Disentangled long-read de Bruijn graphs via optical maps
• Fast and efficient Rmap assembly using the bi-labelled de Bruijn graph

Describes a project that uses

Uses Software

• SOAPdenovo
• ABySS
• Pilon
• DBG2OLC
• Bambus 2
• ALLMAPS
• SOPRA
• SCARPA
• GRASS
• GitHub

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