ORscraper

Last update 11 March 2026

Copyright license MIT license, File License

Software version identifier 0.1.0, PACKAGES.rds, 0.1.1

Description

Clinical reports generated by 'Oncomine Reporter' software contain critical data in unstructured PDF format, making manual extraction time-consuming and error-prone. 'ORscraper' provides a coherent suite of functions to automate this process, allowing researchers to parse reports, identify key biomarkers, extract genetic variant tables, and filter results. It also integrates with the NCBI 'ClinVar' API <https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.

This page was built for software: ORscraper