On error-tolerant DNA screening

DOI10.1016/J.DAM.2006.02.006MaRDI QIDQ2499595zbMATH OpenOpenAlexFDO

Authors Weili Wu, Yaochun Huang, Xiao Huang, Yingshu Li

Publication date 14 August 2006

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2006.02.006

zbMATH Keywords

DNA screeningerror tolerantgroup testingpooling designsimplicial complex

Mathematics Subject Classification ID

Other designs, configurations (05B30) Analysis of algorithms and problem complexity (68Q25) Combinatorics in computer science (68R05) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Recommendations

• Decoding in pooling designs
• Bounding the number of columns which appear only in positive pools
• Probabilistic nonadaptive group testing in the presence of errors and DNA library screening
• Non-adaptive group testing in the presence of errors
• A class of error-correcting pooling designs over complexes

Cites work

• A note on decoding of superimposed codes
• A simple construction of \(d\)-disjunct matrices with certain constant weights
• Decoding in pooling designs
• Error-correcting nonadaptive group testing with \(d^e\)-disjunct matrices
• scientific article; zbMATH DE number 3172224 (Why is no real title available?)
• scientific article; zbMATH DE number 823957 (Why is no real title available?)

Cited in

(10)

• A construction of \(d^z\)-disjunct matrices by orthogonal space and discussion on their design parameters
• Decoding in pooling designs
• Suppression of positional errors in biological development
• A general model of error-prone PCR
• Pooling design and bias correction in DNA library screening
• Construction of \(d(H)\)\,-\,disjunct matrix for group testing in hypergraphs
• An approach of eliminating systematic errors in genetic analysis
• New Error Tolerant Method for Search of Long Repeats in DNA Sequences
• ERROR-TOLERANT TRIVIAL TWO-STAGE GROUP TESTING FOR COMPLEXES USING ALMOST SEPARABLE AND ALMOST DISJUNCT MATRICES
• A construction of d^z-disjunct matrices in a dual space of symplectic space

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