PCMBaseCpp

MaRDI QIDQ139493CRANFDO

Authors Venelin Mitov

Last update 28 February 2026

Copyright license GNU General Public License

Software version identifier 0.1.9, PACKAGES.rds, 0.1.5, 0.1.6, 0.1.7, 0.1.8, 0.1.10, 0.1.11, 0.1.12

Description

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2020) <doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Cites work

• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
• Parallel likelihood calculation for phylogenetic comparative models: The SPLITT C++ library

This page was built for software: PCMBaseCpp