Parameter estimation of nonlinear models in biochemistry: A comparative study on optimization methods

DOI10.1016/S0096-3003(02)00190-XMaRDI QIDQ1406216zbMATH OpenOpenAlexFDO

Authors Necmettin Yildirim, Fatih Akcay, Hüseyin Okur, Derya Yildirim

Publication date 9 September 2003

Published in Applied Mathematics and Computation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0096-3003(02)00190-x

zbMATH Keywords

mathematicsenzyme kineticsinitial value problemoptimization methods

Mathematics Subject Classification ID

Numerical optimization and variational techniques (65K10) Applications of mathematical programming (90C90) Software, source code, etc. for problems pertaining to biology (92-04) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cited in

(10)

• A modified NM-PSO method for parameter estimation problems of models
• Parameter ranking by orthogonalization -- applied to nonlinear mechanistic models
• A qualitative mathematical analysis of a class of nonlinear differential equations: applications in biochemistry
• Calibration of parameters in dynamic energy budget models using direct-search methods
• Bioprocesses Parameter Estimation by Heuristic Optimization Techniques
• Parametrization and comparative analysis of the BFGS optimization algorithm for the determination of optimum linear coefficients
• Efficient and modular algorithms in modeling finite inelastic deformations: objective integration, parameter identification and sub-stepping techniques
• Global minimization and parameter estimation in computational biology.
• Assessment of numerical optimization algorithms for the development of molecular models
• A trust-region-approach for solving a parameter estimation problem from the biotechnology area

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