Parameter selection of pocket extraction algorithm using interaction interface

DOI10.1631/JZUS.2006.A1492MaRDI QIDQ863816zbMATH OpenOpenAlexFDO

Authors Chongmin Kim, Chungin Won, Joonghyun Ryu, Cheolhyung Cho, Jonghwa Bhak, D.-S. Kim

Publication date 2 February 2007

Published in Journal of Zhejiang University. Science A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1631/jzus.2006.a1492

zbMATH Keywords

protein interactionsVoronoi diagrams

Mathematics Subject Classification ID

Numerical aspects of computer graphics, image analysis, and computational geometry (65D18) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

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Cites work

• Euclidean Voronoi diagram of 3D balls and its computation via tracing edges
• Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis
• Extreme elevation on a 2-manifold
• Interface surfaces for protein-protein complexes
• On the definition and the construction of pockets in macromolecules

Cited in

(2)

• On the definition and the construction of pockets in macromolecules
• Data extraction module. A supplementary tool for the Ammos\_Protlig software package

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