pcadapt

MaRDI QIDQ7384020CRANFDO

Authors Florian Privé, Keurcien Luu, Michael Blum

Last update 25 July 2025

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier PACKAGES.rds, 1.0, 2.0.1, 2.0, 2.1.1, 2.1, 2.2, 3.0.1, 3.0.2, 3.0.3, 3.0.4, 3.0, 4.0.0, 4.0.1, 4.0.3, 4.1.0, 4.3.1, 4.3.3, 4.3.5, 4.4.0, 4.4.1

Description

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <doi:10.1093/molbev/msaa053>.

Cites work

• pcadapt: an R package to perform genome scans for selection based on principal component analysis
• Performing Highly Efficient Genome Scans for Local Adaptation with R Package pcadapt Version 4

This page was built for software: pcadapt