PeakSegDisk

MaRDI QIDQ1353446swMATHCRANFDO

Authors Toby Dylan Hocking

Last update 28 November 2023

Copyright license GNU General Public License, version 3.0

Software version identifier 2022.2.1, 2018.11.28, 2019.7.29, 2019.9.10, 2019.9.27, 2020.8.13, 2023.9.4, 2023.11.27

Official website https://cran.r-project.org/web/packages/PeakSegDisk/index.html

Source code repository https://github.com/cran/PeakSegDisk

Description

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints <doi:10.18637/jss.v101.i10> for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

Cites work

• Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data

Cited in

(7)

• Constrained dynamic programming and supervised penalty learning algorithms for peak detection in genomic data
• cghseg
• coseg
• gfpop
• PeakSeg
• PeakSegOptimal
• Alternating Pruned Dynamic Programming for Multiple Epidemic Change-Point Estimation

This page was built for software: PeakSegDisk