Ruriko Yoshida

Available identifiers

zbMath Open yoshida.rurikoMaRDI QIDQ263783

List of research outcomes

Publication	Date of Publication	Type
Hit and Run Sampling from Tropically Convex Sets	2024-02-12	Paper
Tropical Geometric Tools for Machine Learning: the TML package	2023-09-03	Paper
Plücker coordinates of the best-fit Stiefel tropical linear space to a mixture of Gaussian distributions	2023-07-12	Paper
Hit and Run Sampling from Tropically Convex Sets	2022-09-29	Paper
Tropical geometric variation of tree shapes	2022-09-16	Paper
SARS-CoV-2 dissemination using a network of the US counties	2022-05-17	Paper
Tree topologies along a tropical line segment	2022-05-04	Paper
Linear Algebra and Its Applications with R	2021-02-02	Paper
Tropical Support Vector Machines: Evaluations and Extension to Function Spaces	2021-01-27	Paper
Tropical Geometric Variation of Phylogenetic Tree Shapes	2020-10-10	Paper
Tropical Data Science	2020-05-13	Paper
Tropical principal component analysis on the space of ultrametrics	2019-11-24	Paper
Multilocus phylogenetic analysis with gene tree clustering	2019-10-18	Paper
Stephen Fienberg's influence on algebraic statistics	2019-08-02	Paper
Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees	2019-06-24	Paper
Tropical principal component analysis and its application to phylogenetics	2019-03-26	Paper
Semigroups --- A Computational Approach	2019-03-11	Paper
Hybrid schemes for exact conditional inference in discrete exponential families	2018-09-25	Paper
Estimating tropical principal components using the Metropolis-Hastings algorithm	2018-08-17	Paper
Tropical Fermat--Weber Points	2018-06-07	Paper
Tropical Geometry of Phylogenetic Tree Space: A Statistical Perspective	2018-05-31	Paper
Applications of Interval Methods to Phylogenetics	2017-11-23	Paper
Convexity in Tree Spaces	2017-09-18	Paper
Distributions of topological tree metrics between a species tree and a gene tree	2017-05-22	Paper
Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without \(K_{5}\) minors	2016-09-16	Paper
Open Problems on Connectivity of Fibers with Positive Margins in Multi-dimensional Contingency Tables	2016-09-13	Paper
Degree Bounds for a Minimal Markov Basis for the Three-state Toric Homogeneous Markov Chain Model	2016-06-16	Paper
First Steps toward the Geometry of Cophylogeny	2016-06-16	Paper
Reconstructing the Phylogeny	2016-06-10	Paper
Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope	2016-04-05	Paper
Markov bases and subbases for bounded contingency tables	2016-02-19	Paper
The Characteristic Imset Polytope of Bayesian Networks with Ordered Nodes	2015-11-27	Paper
Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees	2015-07-30	Paper
Extremal Positive Semidefinite Matrices for Graphs without $K_5$ Minors	2015-06-22	Paper
https://portal.mardi4nfdi.de/entity/Q5255322	2015-06-15	Paper
https://portal.mardi4nfdi.de/entity/Q4981700	2014-06-24	Paper
Markov degree of the three-state toric homogeneous Markov chain model	2014-06-02	Paper
Estimating the number of zero-one multi-way tables via sequential importance sampling	2013-11-11	Paper
Quadratic Hyperbolicity Preservers & Multiplier Sequences	2013-04-05	Paper
Semigroups and sequential importance sampling for multiway tables	2011-11-28	Paper
Semigroups and sequential importance sampling for multiway tables and beyond	2011-08-10	Paper
Experiments with the site frequency spectrum	2011-06-08	Paper
https://portal.mardi4nfdi.de/entity/Q3558639	2010-05-05	Paper
A Markov basis for conditional test of common diagonal effect in quasi-independence model for square contingency tables	2010-03-30	Paper
On connectivity of fibers with positive marginals in multiple logistic regression	2010-03-01	Paper
Markov bases for two-way subtable sum problems	2009-05-12	Paper
https://portal.mardi4nfdi.de/entity/Q3601428	2009-02-10	Paper
The Geometry of the Neighbor-Joining Algorithm for Small Trees	2009-02-03	Paper
Indispensable monomials of toric ideals and Markov bases	2008-07-11	Paper
A generalization of the integer linear infeasibility problem	2008-05-16	Paper
Short rational functions for toric algebra and applications	2007-08-24	Paper
Effective lattice point counting in rational convex polytopes	2007-08-24	Paper
On the enumeration of certain weighted graphs	2007-07-19	Paper
Partitioning the Sample Space on Five Taxa for the Neighbor Joining Algorithm	2007-03-02	Paper
Integer Programming and Combinatorial Optimization	2005-12-23	Paper
A computational study of integer programming algorithms based on Barvinok's rational functions	2005-10-10	Paper

Research outcomes over time

Doctoral students

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Known relations from the MaRDI Knowledge Graph

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