| Publication | Date of Publication | Type |
|---|
Tropical logistic regression model on space of phylogenetic trees
Bulletin of Mathematical Biology | 2024-10-10 | Paper |
Connecting tables by allowing negative cell counts
Journal of Statistical Theory and Practice | 2024-07-31 | Paper |
Tropical support vector machine and its applications to phylogenomics
Algebraic Statistics | 2024-07-25 | Paper |
Hit and Run Sampling from Tropically Convex Sets
Algebraic Statistics | 2024-02-12 | Paper |
| Tropical Geometric Tools for Machine Learning: the TML package | 2023-09-03 | Paper |
Plücker coordinates of the best-fit Stiefel tropical linear space to a mixture of Gaussian distributions
Information Geometry | 2023-07-12 | Paper |
Tropical Logistic Regression Model on Space of Phylogenetic Trees
(available as arXiv preprint) | 2023-06-15 | Paper |
Maximum Inscribed and Minimum Enclosing Tropical Balls of Tropical Polytopes and Applications to Volume Estimation and Uniform Sampling
(available as arXiv preprint) | 2023-03-05 | Paper |
Hit and Run Sampling from Tropically Convex Sets
Algebraic Statistics | 2022-09-29 | Paper |
Tropical geometric variation of tree shapes
Discrete & Computational Geometry | 2022-09-16 | Paper |
SARS-CoV-2 dissemination using a network of the US counties
SN Operations Research Forum | 2022-05-17 | Paper |
Tree topologies along a tropical line segment
Vietnam Journal of Mathematics | 2022-05-04 | Paper |
| Linear algebra and its applications with R | 2021-02-02 | Paper |
| Tropical Support Vector Machines: Evaluations and Extension to Function Spaces | 2021-01-27 | Paper |
Tropical Geometric Variation of Phylogenetic Tree Shapes
(available as arXiv preprint) | 2020-10-10 | Paper |
| Tropical Data Science | 2020-05-13 | Paper |
Tropical Support Vector Machine and its Applications to Phylogenomics
(available as arXiv preprint) | 2020-03-02 | Paper |
| Tropical principal component analysis on the space of ultrametrics | 2019-11-24 | Paper |
Multilocus phylogenetic analysis with gene tree clustering
Annals of Operations Research | 2019-10-18 | Paper |
Stephen Fienberg's influence on algebraic statistics
Journal of Algebraic Statistics | 2019-08-02 | Paper |
Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees
Biometrika | 2019-06-24 | Paper |
Tropical principal component analysis and its application to phylogenetics
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
Semigroups -- a computational approach
(available as arXiv preprint) | 2019-03-11 | Paper |
Hybrid schemes for exact conditional inference in discrete exponential families
Annals of the Institute of Statistical Mathematics | 2018-09-25 | Paper |
| Estimating tropical principal components using the Metropolis-Hastings algorithm | 2018-08-17 | Paper |
Tropical Fermat-Weber points
SIAM Journal on Discrete Mathematics | 2018-06-07 | Paper |
| Tropical Geometry of Phylogenetic Tree Space: A Statistical Perspective | 2018-05-31 | Paper |
Applications of Interval Methods to Phylogenetics
Algebraic Statistics for Computational Biology | 2017-11-23 | Paper |
Convexity in tree spaces
SIAM Journal on Discrete Mathematics | 2017-09-18 | Paper |
Distributions of topological tree metrics between a species tree and a gene tree
Annals of the Institute of Statistical Mathematics | 2017-05-22 | Paper |
Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without \(K_{5}\) minors
Linear Algebra and its Applications | 2016-09-16 | Paper |
Open problems on connectivity of fibers with positive margins in multi-dimensional contingency tables
Journal of Algebraic Statistics | 2016-09-13 | Paper |
Degree bounds for a minimal Markov basis for the three-state toric homogeneous Markov chain model
Harmony of Gröbner Bases and the Modern Industrial Society - The Second CREST-CSBM International Conference | 2016-06-16 | Paper |
First steps toward the geometry of cophylogeny
Harmony of Gröbner Bases and the Modern Industrial Society - The Second CREST-CSBM International Conference | 2016-06-16 | Paper |
Reconstructing the phylogeny: computational methods
Algebraic and Discrete Mathematical Methods for Modern Biology | 2016-06-10 | Paper |
Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope
Bulletin of Mathematical Biology | 2016-04-05 | Paper |
Markov bases and subbases for bounded contingency tables
Annals of the Institute of Statistical Mathematics | 2016-02-19 | Paper |
The characteristic imset polytope of Bayesian networks with ordered nodes
SIAM Journal on Discrete Mathematics | 2015-11-27 | Paper |
The characteristic imset polytope of Bayesian networks with ordered nodes
SIAM Journal on Discrete Mathematics | 2015-11-27 | Paper |
| Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees | 2015-07-30 | Paper |
| Extremal Positive Semidefinite Matrices for Graphs without $K_5$ Minors | 2015-06-22 | Paper |
| scientific article; zbMATH DE number 6445738 (Why is no real title available?) | 2015-06-15 | Paper |
| Phylogenetic tree reconstruction: geometric approaches | 2014-06-24 | Paper |
Markov degree of the three-state toric homogeneous Markov chain model
Beiträge zur Algebra und Geometrie | 2014-06-02 | Paper |
Estimating the number of zero-one multi-way tables via sequential importance sampling
Annals of the Institute of Statistical Mathematics | 2013-11-11 | Paper |
| Quadratic Hyperbolicity Preservers & Multiplier Sequences | 2013-04-05 | Paper |
| Semigroups and sequential importance sampling for multiway tables | 2011-11-28 | Paper |
| Semigroups and sequential importance sampling for multiway tables and beyond | 2011-08-10 | Paper |
Experiments with the site frequency spectrum
Bulletin of Mathematical Biology | 2011-06-08 | Paper |
Computing holes in semi-groups and its applications to transportation problems
(available as arXiv preprint) | 2010-05-05 | Paper |
A Markov basis for conditional test of common diagonal effect in quasi-independence model for square contingency tables
Computational Statistics and Data Analysis | 2010-03-30 | Paper |
On connectivity of fibers with positive marginals in multiple logistic regression
Journal of Multivariate Analysis | 2010-03-01 | Paper |
Markov bases for two-way subtable sum problems
Journal of Pure and Applied Algebra | 2009-05-12 | Paper |
Saturation points on faces of a rational polyhedral cone
(available as arXiv preprint) | 2009-02-10 | Paper |
The Geometry of the Neighbor-Joining Algorithm for Small Trees
Algebraic Biology | 2009-02-03 | Paper |
Indispensable monomials of toric ideals and Markov bases
Journal of Symbolic Computation | 2008-07-11 | Paper |
A generalization of the integer linear infeasibility problem
Discrete Optimization | 2008-05-16 | Paper |
Effective lattice point counting in rational convex polytopes
Journal of Symbolic Computation | 2007-08-24 | Paper |
Short rational functions for toric algebra and applications
Journal of Symbolic Computation | 2007-08-24 | Paper |
On the enumeration of certain weighted graphs
Discrete Applied Mathematics | 2007-07-19 | Paper |
| Partitioning the Sample Space on Five Taxa for the Neighbor Joining Algorithm | 2007-03-02 | Paper |
Integer Programming and Combinatorial Optimization
Lecture Notes in Computer Science | 2005-12-23 | Paper |
A computational study of integer programming algorithms based on Barvinok's rational functions
Discrete Optimization | 2005-10-10 | Paper |
Neighbor joining with phylogenetic diversity estimates
(available as arXiv preprint) | N/A | Paper |
Tropical Decision Boundaries for Neural Networks Are Robust Against Adversarial Attacks
(available as arXiv preprint) | N/A | Paper |
Tropical Fermat-Weber Polytropes
(available as arXiv preprint) | N/A | Paper |
