| Publication | Date of Publication | Type |
|---|
| On algorithmic self-assembly of squares by co-transcriptional folding | 2024-09-11 | Paper |
| Towards composable computations by RNA co-transcriptional folding: a proof-of-concept demonstration of nested loops in oritatami | 2024-05-06 | Paper |
| Oritatami systems assemble shapes No less complex than tile assembly model (ATAM) | 2024-04-23 | Paper |
| Freezing 1-Tag Systems with States | 2024-04-09 | Paper |
| Transcript design problem of oritatami systems | 2024-02-09 | Paper |
| Programmable single-stranded architectures for computing | 2024-02-09 | Paper |
| Nondeterministic seedless oritatami systems and hardness of testing their equivalence | 2023-11-30 | Paper |
| Counting infinitely by oritatami co-transcriptional folding | 2023-09-08 | Paper |
| Linear Bounds on the Size of Conformations in Greedy Deterministic Oritatami | 2023-08-15 | Paper |
| Simple intrinsic simulation of cellular automata in oritatami molecular folding model | 2022-10-13 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5091013 | 2022-07-21 | Paper |
| Square network on a word | 2021-11-11 | Paper |
| A general architecture of oritatami systems for simulating arbitrary finite automata | 2021-06-03 | Paper |
| Counting Infinitely by Oritatami Co-transcriptional Folding | 2020-07-20 | Paper |
| A general architecture of oritatami systems for simulating arbitrary finite automata | 2020-05-06 | Paper |
| Self-Attraction Removal from Oritatami Systems | 2019-12-10 | Paper |
| On the power of oritatami cotranscriptional folding with unary bead sequence | 2019-10-15 | Paper |
| Single-stranded architectures for computing | 2019-10-15 | Paper |
| 3-color bounded patterned self-assembly | 2019-07-08 | Paper |
| Know when to fold 'em: self-assembly of shapes by folding in oritatami | 2018-11-08 | Paper |
| Transcript design problem of oritatami systems | 2018-11-08 | Paper |
| Towards the algorithmic molecular self-assembly of fractals by cotranscriptional folding | 2018-11-07 | Paper |
| Programming Biomolecules That Fold Greedily During Transcription | 2018-03-21 | Paper |
| The Complexity of Fixed-Height Patterned Tile Self-assembly | 2018-02-22 | Paper |
| Oritatami System; a Survey and the Impossibility of Simple Simulation at Small Delays | 2018-01-19 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5365065 | 2017-09-29 | Paper |
| Self-attraction removal from oritatami systems | 2017-08-31 | Paper |
| Rule set design problems for oritatami systems | 2017-05-18 | Paper |
| Binary pattern tile set synthesis is NP-hard | 2017-05-11 | Paper |
| A manually-checkable proof for the NP-hardness of 11-color pattern self-assembly tileset synthesis | 2017-02-22 | Paper |
| The extended equation of Lyndon and Schützenberger | 2016-12-28 | Paper |
| Nondeterministic Seedless Oritatami Systems and Hardness of Testing Their Equivalence | 2016-11-30 | Paper |
| The Complexity of Fixed-Height Patterned Tile Self-assembly | 2016-11-09 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5740422 | 2016-07-26 | Paper |
| Semilinear sets and counter machines: a brief survey | 2016-05-11 | Paper |
| On computational complexity of graph inference from counting | 2016-04-06 | Paper |
| Dynamic simulation of 1D cellular automata in the Active aTAM | 2016-04-01 | Paper |
| Square-Density Increasing Mappings | 2015-11-04 | Paper |
| Binary pattern tile set synthesis is NP-hard | 2015-10-27 | Paper |
| Program size and temperature in self-assembly | 2015-09-02 | Paper |
| A Stronger Square Conjecture on Binary Words | 2015-01-13 | Paper |
| Generalised Lyndon-Schützenberger Equations | 2014-10-14 | Paper |
| https://portal.mardi4nfdi.de/entity/Q3191568 | 2014-10-06 | Paper |
| Operational State Complexity under Parikh Equivalence | 2014-08-07 | Paper |
| 3-Color Bounded Patterned Self-assembly | 2014-07-07 | Paper |
| On the Behavior of Tile Assembly System at High Temperatures | 2014-04-30 | Paper |
| Transfer matrix analysis of one-dimensional majority cellular automata with thermal noise | 2014-04-11 | Paper |
| Computing Minimum Tile Sets to Self-Assemble Color Patterns | 2014-01-14 | Paper |
| On the open problem of Ginsburg concerning semilinear sets and related problems | 2014-01-10 | Paper |
| Converting nondeterministic automata and context-free grammars into Parikh equivalent one-way and two-way deterministic automata | 2013-12-19 | Paper |
| Combinatorial Optimization in Pattern Assembly | 2013-06-28 | Paper |
| CHARACTERIZATIONS OF BOUNDED SEMILINEAR LANGUAGES BY ONE-WAY AND TWO-WAY DETERMINISTIC MACHINES | 2013-06-06 | Paper |
| On the Boundedness Property of Semilinear Sets | 2013-05-28 | Paper |
| Converting Nondeterministic Automata and Context-Free Grammars into Parikh Equivalent Deterministic Automata | 2012-11-02 | Paper |
| One-reversal counter machines and multihead automata: revisited | 2012-10-11 | Paper |
| Schema for parallel insertion and deletion: revisited | 2012-08-29 | Paper |
| On the Behavior of Tile Assembly System at High Temperatures | 2012-08-14 | Paper |
| Triangular and Hexagonal Tile Self-assembly Systems | 2012-06-15 | Paper |
| Iterated Hairpin Completions of Non-crossing Words | 2012-06-15 | Paper |
| Absoluteness of subword inequality is undecidable | 2012-03-13 | Paper |
| Program Size and Temperature in Self-Assembly | 2011-12-16 | Paper |
| K-Comma Codes and Their Generalizations | 2011-11-22 | Paper |
| On the Regularity of Iterated Hairpin Completion of a Single Word | 2011-11-22 | Paper |
| An Improved Bound for an Extension of Fine and Wilf’s Theorem and Its Optimality | 2011-06-14 | Paper |
| An extension of the Lyndon-Schützenberger result to pseudoperiodic words | 2011-04-28 | Paper |
| PROPERTIES OF PSEUDO-PRIMITIVE WORDS AND THEIR APPLICATIONS | 2011-03-30 | Paper |
| ORTHOGONAL SHUFFLE ON TRAJECTORIES | 2011-02-23 | Paper |
| Block insertion and deletion on trajectories | 2011-02-21 | Paper |
| One-Reversal Counter Machines and Multihead Automata: Revisited | 2011-02-15 | Paper |
| Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement | 2011-01-28 | Paper |
| Triangular Tile Self-assembly Systems | 2011-01-28 | Paper |
| Schema for Parallel Insertion and Deletion | 2010-08-31 | Paper |
| On a special class of primitive words | 2010-02-05 | Paper |
| On the Reversibility of Parallel Insertion, and Its Relation to Comma Codes | 2009-11-05 | Paper |
| An Extension of the Lyndon Schützenberger Result to Pseudoperiodic Words | 2009-07-07 | Paper |
| Twin-roots of words and their properties | 2009-06-04 | Paper |
| On pseudoknot-bordered words and their properties | 2009-03-11 | Paper |
| On a Special Class of Primitive Words | 2009-02-03 | Paper |
| Duplication in DNA Sequences | 2008-10-30 | Paper |
| Grammatical Inference: Algorithms and Applications | 2006-10-20 | Paper |
