Daniel Merkle

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List of research outcomes

This list is not complete and representing at the moment only items from zbMATH Open and arXiv. We are working on additional sources - please check back here soon!

PublicationDate of PublicationType
DNA-templated synthesis optimization
Natural Computing
2023-11-30Paper
A generic framework for engineering graph canonization algorithms
ACM Journal of Experimental Algorithmics
2023-05-23Paper
Rule composition in graph transformation models of chemical reactions2021-09-02Paper
Towards mechanistic prediction of mass spectra using graph transformation2021-09-02Paper
Rewriting theory for the life sciences: a unifying theory of CTMC semantics
Theoretical Computer Science
2021-08-27Paper
Forbidden time travel: characterization of time-consistent tree reconciliation maps
(available as arXiv preprint)
2020-05-27Paper
Linear time canonicalization and enumeration of non-isomorphic 1-face embeddings
2018 Proceedings of the Twentieth Workshop on Algorithm Engineering and Experiments (ALENEX)
2019-09-12Paper
A generic framework for engineering graph canonization algorithms
2018 Proceedings of the Twentieth Workshop on Algorithm Engineering and Experiments (ALENEX)
2019-09-12Paper
Partial homology relations -- satisfiability in terms of di-cographs
(available as arXiv preprint)
2018-10-04Paper
DNA-templated synthesis optimization2018-02-02Paper
A software package for chemically inspired graph transformation
Graph Transformation
2016-09-05Paper
Automatic inference of graph transformation rules using the cyclic nature of chemical reactions
Graph Transformation
2016-09-05Paper
Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data
Entropy
2016-05-10Paper
50 Shades of Rule Composition
Formal Methods in Macro-Biology
2015-08-06Paper
On the complexity of reconstructing chemical reaction networks
Mathematics in Computer Science
2015-02-04Paper
Finding all sorting tandem duplication random loss operations
Journal of Discrete Algorithms
2011-05-03Paper
ADAPTING TO DYNAMIC ENVIRONMENTS: POLYETHISM IN RESPONSE THRESHOLD MODELS FOR SOCIAL INSECTS
Advances in Complex Systems
2009-08-13Paper
Finding All Sorting Tandem Duplication Random Loss Operations
Combinatorial Pattern Matching
2009-07-07Paper
A decentralization approach for swarm intelligence algorithms in networks applied to multi swarm PSO
International Journal of Intelligent Computing and Cybernetics
2008-07-11Paper
Self-organized task allocation for service tasks in computing systems with reconfigurable components
JMMA. Journal of Mathematical Modelling and Algorithms
2008-06-11Paper
Parallel Ant Colony Algorithms
Parallel Metaheuristics
2007-03-05Paper
Computational Science – ICCS 2005
Lecture Notes in Computer Science
2005-11-30Paper
On solving permutation scheduling problems with ant colony optimization
International Journal of Systems Science. Principles and Applications of Systems and Integration
2005-11-15Paper
DECENTRALIZED PACKET CLUSTERING IN ROUTER-BASED NETWORKS
International Journal of Foundations of Computer Science
2005-09-12Paper
scientific article; zbMATH DE number 2079914 (Why is no real title available?)2004-08-03Paper
On enforced convergence of ACO and its implementation on the reconfigurable mesh architecture using size reduction tasks
The Journal of Supercomputing
2004-05-27Paper
Ant colony optimization with global pheromone evaluation for scheduling a single machine
Applied Intelligence
2003-08-06Paper
scientific article; zbMATH DE number 1908584 (Why is no real title available?)
Genetic Programming and Evolvable Machines
2003-05-11Paper
scientific article; zbMATH DE number 1886329 (Why is no real title available?)2003-03-19Paper
scientific article; zbMATH DE number 1706205 (Why is no real title available?)2001-01-01Paper


Research outcomes over time


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