| Publication | Date of Publication | Type |
|---|
An efficient finite element solver for a nonuniform size-modified Poisson-Nernst-Planck ion channel model
Journal of Computational Physics | 2024-11-15 | Paper |
A Poisson-Nernst-Planck single ion channel model and its effective finite element solver
Journal of Computational Physics | 2023-04-26 | Paper |
Efficient generation of membrane and solvent tetrahedral meshes for ion channel finite element calculation
(available as arXiv preprint) | 2022-10-13 | Paper |
| Efficient generation of membrane and solvent tetrahedral meshes for ion channel finite element calculation | 2022-10-13 | Paper |
An efficient finite element iterative method for solving a nonuniform size modified Poisson-Boltzmann ion channel model
Journal of Computational Physics | 2022-10-11 | Paper |
A finite element iterative solver for a PNP ion channel model with Neumann boundary condition and membrane surface charge
Journal of Computational Physics | 2022-04-14 | Paper |
Efficient Generation of Membrane and Solvent Tetrahedral Meshes for Ion Channel Finite Element Calculation
(available as arXiv preprint) | 2022-01-14 | Paper |
An Efficient Finite Element Iterative Method for Solving a Nonuniform Size Modified Poisson-Boltzmann Ion Channel Model
(available as arXiv preprint) | 2021-08-31 | Paper |
An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions
SIAM Journal on Scientific Computing | 2021-01-29 | Paper |
A hybrid solver of size modified Poisson-Boltzmann equation by domain decomposition, finite element, and finite difference
Applied Mathematical Modelling | 2020-02-12 | Paper |
Preconditioners for nonsymmetric indefinite linear systems
Journal of Computational and Applied Mathematics | 2019-11-05 | Paper |
Study of local and nonlocal Poisson-Boltzmann equations for linear and nonlinear models with spherical symmetry
Journal of Computational and Applied Mathematics | 2019-07-26 | Paper |
A Poisson-Boltzmann equation test model for protein in spherical solute region and its applications
Computational and Mathematical Biophysics | 2019-05-21 | Paper |
On the analysis and application of an ion size-modified Poisson-Boltzmann equation
Nonlinear Analysis. Real World Applications | 2019-02-27 | Paper |
Series solution of a nonlocal dielectric test model for a solute ball with point charges in an ionic solvent
Communications in Information and Systems | 2018-11-30 | Paper |
Poisson-Fermi formulation of nonlocal electrostatics in electrolyte solutions
Molecular Based Mathematical Biology | 2018-08-31 | Paper |
| New finite element iterative methods for solving a nonuniform ionic size modified Poisson-Boltzmann equation | 2018-01-25 | Paper |
A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules
Journal of Computational Physics | 2016-12-20 | Paper |
A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule
Journal of Computational Physics | 2016-12-05 | Paper |
New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics
Journal of Computational Physics | 2016-12-05 | Paper |
SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
Molecular Based Mathematical Biology | 2016-10-12 | Paper |
A Poisson-Boltzmann equation test model for protein in spherical solute region and its applications
Molecular Based Mathematical Biology | 2016-10-12 | Paper |
A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation
Journal of Computational and Applied Mathematics | 2016-06-20 | Paper |
| An effective minimization protocol for solving a size-modified Poisson-Boltzmann equation for biomolecule in ionic solvent | 2016-01-21 | Paper |
A new linear Poisson-Boltzmann equation and finite element solver by solution decomposition approach
Communications in Mathematical Sciences | 2015-04-22 | Paper |
A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent
Nonlinear Analysis. Real World Applications | 2014-09-29 | Paper |
Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent
SIAM Journal on Scientific Computing | 2014-03-28 | Paper |
An active set method for the nonnegativity constrained image deblurring problem
Acta Mathematica Scientia. Series A. (Chinese Edition) | 2013-11-19 | Paper |
A fast solver for a nonlocal dielectric continuum model
SIAM Journal on Scientific Computing | 2012-08-23 | Paper |
A new boundary integral equation for molecular electrostatics with charges over whole space
BIT | 2012-01-10 | Paper |
An improved approximate Newton method for implicit Runge-Kutta formulas
Journal of Computational and Applied Mathematics | 2011-08-02 | Paper |
Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization
Computational Optimization and Applications | 2011-05-11 | Paper |
An incomplete Hessian Newton minimization method and its application in a chemical database problem
Computational Optimization and Applications | 2010-01-25 | Paper |
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model
Journal of Computational Physics | 2009-10-15 | Paper |
New parallel symmetric SOR preconditioners by multi-type partitioning
International Journal of Computer Mathematics | 2009-02-18 | Paper |
A new minimization protocol for solving nonlinear Poisson-Boltzmann mortar finite element equation
BIT | 2008-01-07 | Paper |
Computational and Information Science
Lecture Notes in Computer Science | 2006-10-10 | Paper |
A New Block Parallel SOR Method and Its Analysis
SIAM Journal on Scientific Computing | 2006-05-30 | Paper |
Analysis of a class of parallel multigrid smoothers
BIT | 2005-09-26 | Paper |
Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases
Mathematical Programming. Series A. Series B | 2003-10-29 | Paper |
Analysis of the SHAKE-SOR algorithm for constrained molecular dynamics simulations
Methods and Applications of Analysis | 2002-06-19 | Paper |
A More Lenient Stopping Rule for Line Search Algorithms
Optimization Methods & Software | 2002-01-01 | Paper |
Remark on Algorithm 702—the updated truncated Newton minimization package
ACM Transactions on Mathematical Software | 2001-07-03 | Paper |
| scientific article; zbMATH DE number 1531959 (Why is no real title available?) | 2001-02-27 | Paper |
| scientific article; zbMATH DE number 1489987 (Why is no real title available?) | 2000-08-13 | Paper |
Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications
SIAM Journal on Optimization | 1999-11-24 | Paper |
New Parallel SOR Method by Domain Partitioning
SIAM Journal on Scientific Computing | 1999-11-24 | Paper |
| scientific article; zbMATH DE number 930548 (Why is no real title available?) | 1996-11-20 | Paper |
| scientific article; zbMATH DE number 567676 (Why is no real title available?) | 1994-10-10 | Paper |
| scientific article; zbMATH DE number 4172326 (Why is no real title available?) | 1990-01-01 | Paper |
| scientific article; zbMATH DE number 4024703 (Why is no real title available?) | 1986-01-01 | Paper |
An Efficient Finite Element Solver for a Nonuniform size-modified Poisson-Nernst-Planck Ion Channel Model
(available as arXiv preprint) | N/A | Paper |
