Chris Thachuk

Available identifiers

zbMath Open thachuk.chrisMaRDI QIDQ390872

List of research outcomes

Publication	Date of Publication	Type
Fridge compiler: optimal circuits from molecular inventories	2024-02-28	Paper
Predicting minimum free energy structures of multi-stranded nucleic acid complexes is APX-hard	2023-09-21	Paper
Computing properties of stable configurations of thermodynamic binding networks	2019-07-31	Paper
DNA walker circuits: computational potential, design, and verification	2019-07-08	Paper
Verifying chemical reaction network implementations: a pathway decomposition approach	2019-06-18	Paper
A general-purpose CRN-to-DSD compiler with formal verification, optimization, and simulation capabilities	2018-02-02	Paper
The design space of strand displacement cascades with toehold-size clamps	2018-02-02	Paper
Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates	2018-02-02	Paper
Thermodynamic binding networks	2018-02-02	Paper
Stochastic simulation of the kinetics of multiple interacting nucleic acid strands	2015-09-30	Paper
Leakless DNA strand displacement systems	2015-09-30	Paper
The complexity of string partitioning	2015-05-04	Paper
Fast algorithmic self-assembly of simple shapes using random agitation	2014-10-08	Paper
DNA Walker Circuits: Computational Potential, Design, and Verification	2014-07-07	Paper
Compressed indexes for text with wildcards	2014-01-09	Paper
Logically and physically reversible natural computing: a tutorial	2013-12-17	Paper
Indexing hypertext	2013-06-24	Paper
Efficient codon optimization with motif engineering	2013-01-18	Paper
Space and energy efficient computation with DNA strand displacement systems	2012-11-06	Paper
The Complexity of String Partitioning	2012-08-14	Paper
Efficient Codon Optimization with Motif Engineering	2012-01-13	Paper
Less haste, less waste: on recycling and its limits in strand displacement systems	2011-09-16	Paper
Succincter text indexing with wildcards	2011-06-29	Paper
NP-completeness of the energy barrier problem without pseudoknots and temporary arcs	2011-05-23	Paper
Complexity of finding non-planar rectilinear drawings of graphs	2011-02-11	Paper
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots	2010-01-07	Paper
Complexity of a Collision-Aware String Partition Problem and Its Relation to Oligo Design for Gene Synthesis	2008-07-10	Paper

Research outcomes over time

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