| Publication | Date of Publication | Type |
|---|
Modeling the velocity of evolving lineages and predicting dispersal patterns
Proceedings of the National Academy of Sciences of the United States of America | 2026-03-13 | Paper |
Interpreting observational studies: why empirical calibration is needed to correct p-values
Statistics in Medicine | 2025-08-19 | Paper |
Robust empirical calibration of p-values using observational data
Statistics in Medicine | 2025-08-05 | Paper |
Zigzag Path Connects Two Monte Carlo Samplers: Hamiltonian Counterpart to a Piecewise Deterministic Markov Process
Journal of the American Statistical Association | 2025-06-17 | Paper |
On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2
Proceedings of the National Academy of Sciences of the United States of America | 2025-03-10 | Paper |
Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza
Statistics in Medicine | 2025-02-25 | Paper |
Bayesian safety surveillance with adaptive bias correction
Statistics in Medicine | 2024-10-31 | Paper |
Adjusting for both sequential testing and systematic error in safety surveillance using observational data: empirical calibration and MaxSPRT
Statistics in Medicine | 2024-10-30 | Paper |
A surrogate \(\ell_0\) sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data
Statistics in Medicine | 2024-10-29 | Paper |
A plea to stop using the case-control design in retrospective database studies
Statistics in Medicine | 2024-10-29 | Paper |
Computational methods for birth-death processes
Wiley Interdisciplinary Reviews. WIREs Computational Statistics | 2024-09-11 | Paper |
Massive Parallelization of Massive Sample-Size Survival Analysis
Journal of Computational and Graphical Statistics | 2024-06-10 | Paper |
Shrinkage with shrunken shoulders: Gibbs sampling shrinkage model posteriors with guaranteed convergence rates
Bayesian Analysis | 2024-02-27 | Paper |
Shrinkage with shrunken shoulders: Gibbs sampling shrinkage model posteriors with guaranteed convergence rates
Bayesian Analysis | 2024-02-27 | Paper |
Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in “Large <i>n</i> , Large <i>p</i> ” Bayesian Sparse Regression
Journal of the American Statistical Association | 2024-01-08 | Paper |
| EmpiricalCalibration | 2023-12-21 | Software |
| On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2 | 2023-06-27 | Paper |
Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements
Journal of the American Statistical Association | 2023-03-27 | Paper |
Bayesian mitigation of spatial coarsening for a Hawkes model applied to gunfire, wildfire and viral contagion
The Annals of Applied Statistics | 2022-05-06 | Paper |
Massive Parallelization Boosts Big Bayesian Multidimensional Scaling
Journal of Computational and Graphical Statistics | 2022-03-29 | Paper |
Scalable Algorithms for Large Competing Risks Data
Journal of Computational and Graphical Statistics | 2022-03-29 | Paper |
Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
The Annals of Applied Statistics | 2021-11-15 | Paper |
Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
The Annals of Applied Statistics | 2021-10-14 | Paper |
Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data
Statistics and Computing | 2021-06-03 | Paper |
Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data
Statistics and Computing | 2021-06-03 | Paper |
A scalable surrogate L₀ sparse regression method for generalized linear models with applications to large scale data
Journal of Statistical Planning and Inference | 2021-05-07 | Paper |
Hamiltonian zigzag sampler got more momentum than its Markovian counterpart: Equivalence of two zigzags under a momentum refreshment limit
(available as arXiv preprint) | 2021-04-15 | Paper |
| BeastJar | 2020-10-26 | Software |
Hierarchical models for multiple, rare outcomes using massive observational healthcare databases
Statistical Analysis and Data Mining: The ASA Data Science Journal | 2020-10-14 | Paper |
StepBrothers: inferring partially shared ancestries among recombinant viral sequences
Biostatistics | 2020-08-04 | Paper |
On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model
Journal of Mathematical Biology | 2020-02-21 | Paper |
Efficiency of protein production from mRNA
Journal of Statistical Theory and Practice | 2019-09-13 | Paper |
| scientific article; zbMATH DE number 7084637 (Why is no real title available?) | 2019-07-23 | Paper |
Direct likelihood-based inference for discretely observed stochastic compartmental models of infectious disease
The Annals of Applied Statistics | 2018-11-15 | Paper |
Direct likelihood-based inference for discretely observed stochastic compartmental models of infectious disease
The Annals of Applied Statistics | 2018-11-15 | Paper |
Consistency and convergence rate of phylogenetic inference via regularization
The Annals of Statistics | 2018-09-14 | Paper |
Massive parallelization of serial inference algorithms for a complex generalized linear model
ACM Transactions on Modeling and Computer Simulation | 2018-04-16 | Paper |
Massive parallelization of serial inference algorithms for a complex generalized linear model
ACM Transactions on Modeling and Computer Simulation | 2018-04-16 | Paper |
Birth/birth-death processes and their computable transition probabilities with biological applications
Journal of Mathematical Biology | 2018-04-05 | Paper |
Birth/birth-death processes and their computable transition probabilities with biological applications
Journal of Mathematical Biology | 2018-04-05 | Paper |
Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data
Proceedings of the National Academy of Sciences | 2018-03-12 | Paper |
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Virus Evolution | 2018-01-01 | Paper |
Estimation for general birth-death processes
Journal of the American Statistical Association | 2017-08-04 | Paper |
Estimation for general birth-death processes
Journal of the American Statistical Association | 2017-08-04 | Paper |
A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
Computational Biology and Chemistry | 2017-06-28 | Paper |
Graphics processing units and high-dimensional optimization
Statistical Science | 2016-01-22 | Paper |
Graphics processing units and high-dimensional optimization
Statistical Science | 2016-01-22 | Paper |
Comment on article by Rubio and Steel
Bayesian Analysis | 2015-12-21 | Paper |
Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
The Annals of Applied Statistics | 2015-10-28 | Paper |
Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
The Annals of Applied Statistics | 2015-10-28 | Paper |
Sex, lies and self-reported counts: Bayesian mixture models for heaping in longitudinal count data via birth-death processes
The Annals of Applied Statistics | 2015-10-28 | Paper |
Sex, lies and self-reported counts: Bayesian mixture models for heaping in longitudinal count data via birth-death processes
The Annals of Applied Statistics | 2015-10-28 | Paper |
Multiple self-controlled case series for large-scale longitudinal observational databases
Biometrics | 2014-04-08 | Paper |
Fitting birth-death processes to panel data with applications to bacterial DNA fingerprinting
The Annals of Applied Statistics | 2014-03-28 | Paper |
Fitting birth-death processes to panel data with applications to bacterial DNA fingerprinting
The Annals of Applied Statistics | 2014-03-28 | Paper |
Interpreting observational studies: why empirical calibration is needed to correct p ‐values
Statistics in Medicine | 2013-07-30 | Paper |
Modeling Protein Expression and Protein Signaling Pathways
Journal of the American Statistical Association | 2013-01-31 | Paper |
Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution
Journal of Mathematical Biology | 2012-10-22 | Paper |
Alignment Uncertainty and Genomic Analysis
Science | 2011-11-30 | Paper |
Reuse, recycle, reweigh: combating influenza through efficient sequential Bayesian computation for massive data
The Annals of Applied Statistics | 2011-06-20 | Paper |
Two-way Bayesian hierarchical phylogenetic models: an application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment
Computational Statistics and Data Analysis | 2010-03-30 | Paper |
Bayesian analysis of elapsed times in continuous‐time Markov chains
The Canadian Journal of Statistics | 2009-01-15 | Paper |
Counting labeled transitions in continuous-time Markov models of evolution
Journal of Mathematical Biology | 2008-08-18 | Paper |
Models for Estimating Bayes Factors with Applications to Phylogeny and Tests of Monophyly
Biometrics | 2006-01-12 | Paper |
Inferring Spatial Phylogenetic Variation Along Nucleotide Sequences
Journal of the American Statistical Association | 2004-06-10 | Paper |
Evolutionary Similarity Among Genes
Journal of the American Statistical Association | 2004-06-10 | Paper |
