phylepic

Last update 12 September 2025

Copyright license MIT license, File License

Software version identifier PACKAGES.rds, 0.2.0, 0.3.0

Description

A collection of utilities and 'ggplot2' extensions to assist with visualisations in genomic epidemiology. This includes the 'phylepic' chart, a visual combination of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions such as date axes binned by week are relevant for other applications in epidemiology and beyond. The approach is described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.

Cites work

Combined visualization of genomic and epidemiological data for outbreaks

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