plantmix

MaRDI QIDQ7376292CRANFDO

Authors Timothée Flutre

Last update 14 October 2026

Copyright license GNU Affero General Public License, version 3.0

Software version identifier PACKAGES.rds, 1.0.2, 1.0.3, PACKAGES.rds, 1.0.3, 1.0.4

Description

Fit linear mixed models dedicated to the genetic study of plant mixtures, such as those based on general and specific mixing abilities (GMA-SMA) as well as direct and social breeding values (DBV-SBV), also known as direct and indirect genetic effects (DGE-IGE). More details in Forst et al (2019, <doi:10.1016/j.fcr.2019.107571>) for GMA-SMA models, and Salomon et al (2026, <doi:10.1093/genetics/iyag177>) for DBV-SBV models. The package also provides functions to optimize experimental designs, simulate data sets and compute interaction indices.

Cites work

• A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat
• Joint modeling of social genetic effects in mono- and pluri-specific groups: case study in intercrops

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