plsgenomics
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Plsgenomics
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
Cited in
(23)- An empirical comparison of two approaches for CDPCA in high-dimensional data
- biplotbootGUI
- Clustering, classification, discriminant analysis, and dimension reduction via generalized hyperbolic mixtures
- [HDDA] sparse subspace constrained partial least squares
- A variational approximations-DIC rubric for parameter estimation and mixture model selection within a family setting
- Model-free feature screening for ultrahigh dimensional data via a Pearson chi-square based index
- Comparative study of L1 regularized logistic regression methods for variable selection
- Dimension reduction for model-based clustering via mixtures of multivariate \(t\)-distributions
- Ensemble of penalized logistic models for classification of high-dimensional data
- clustvarsel
- teigen
- mixOmics
- siggenes
- ClustOfVar
- SCGLR
- longitudinal
- PenPC
- mcfa
- sparsepca
- Prediction of tumour pathological subtype from genomic profile using sparse logistic regression with random effects
- InfoGram and admissible machine learning
- MultiGroupO
- iRF
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