polymapR

MaRDI QIDQ7382829CRANFDO

Authors Peter Bourke, Geert van Geest

Last update 17 October 2025

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier PACKAGES.rds, 1.0.11, 1.0.12, 1.0.13, 1.0.14, 1.0.15, 1.0.16, 1.0.17, 1.0.18, 1.0.19, 1.0.20, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.7

Description

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Cites work

• polymapR—linkage analysis and genetic map construction from F1 populations of outcrossing polyploids
• Using probabilistic genotypes in linkage analysis of polyploids

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