Predicting protein-protein interactions by a supervised learning classifier

DOI10.1016/J.COMPBIOLCHEM.2004.07.003MaRDI QIDQ2490545zbMATH OpenOpenAlexFDO

Authors Yang Huang, Dmitrij Frishman, Ilya B. Muchnik

Publication date 16 May 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2004.07.003

zbMATH Keywords

genome analysisprotein domainsSVM learning

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Learning and adaptive systems in artificial intelligence (68T05) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

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• Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique
• A novel method based on new adaptive LVQ neural network for predicting protein-protein interactions from protein sequences
• Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
• Predicting protein-protein interactions by IDQD based on sequence information
• Classifiers for discrimination of significant protein residues and protein-protein interaction using concepts of information theory and machine learning.
• A hybrid rule-induction/likelihood-ratio based approach for predicting protein-protein interac\-tions
• Support vector machine for predicting protein interactions using domain scores
• Using ensemble methods to deal with imbalanced data in predicting protein-protein interactions
• scientific article; zbMATH DE number 1977818 (Why is no real title available?)
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• Predicting the Strongest Domain-Domain Contact in Interacting Protein Pairs
• INFERRING PROTEIN-PROTEIN INTERACTIONS FROM MESSENGER RNA EXPRESSION PROFILES WITH SVM
• Computational Science - ICCS 2004
• Prediction of protein-protein interaction types using the decision templates based on multiple classier fusion
• Identifying the interacting positions of a protein using Boolean learning and support vector machines
• Effect of example weights on prediction of protein-protein interactions

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