predmicror
Provides predictive microbiology model functions and convenience wrappers for fitting primary growth, microbial inactivation, dynamic, omnibus, and cardinal parameter models to experimental data using nonlinear least squares and related mixed-effects or time-varying workflows. Includes helper functions for extracting fitted values, calculating model diagnostics, and comparing fitted models. Implemented model families include those described by: Zwietering et al. (1990) <doi:10.1128/AEM.56.6.1875-1881.1990>, Baranyi and Roberts (1994) <doi:10.1016/0168-1605(94)90157-0>, Baranyi and Roberts (1995) <doi:10.1016/0168-1605(94)00121-L>, Buchanan et al. (1997) <doi:10.1006/fmic.1997.0125>, Richards (1959) <doi:10.1093/jxb/10.2.290>, Fang et al. (2012) <doi:10.1111/j.1750-3841.2012.02873.x>, Fang et al. (2013) <doi:10.1016/j.fm.2012.12.005>, Huang (2008) <doi:10.1111/j.1750-3841.2008.00785.x>, Huang (2009) <doi:10.1016/j.jfoodeng.2008.07.011>, Huang (2013) <doi:10.1016/j.foodcont.2012.11.019>, Geeraerd et al. (2005) <doi:10.1016/j.ijfoodmicro.2004.11.038>, van Boekel (2002) <doi:10.1016/S0168-1605(01)00742-5>, Peleg (1999) <doi:10.1016/S0963-9969(99)00081-2>, Mafart et al. (2002) <doi:10.1016/S0168-1605(01)00624-9>, Albert and Mafart (2005) <doi:10.1016/j.ijfoodmicro.2004.10.016>, Rosso et al. (1993) <doi:10.1006/jtbi.1993.1099>, Rosso et al. (1995) <doi:10.1128/AEM.61.2.610-616.1995>, and Rosso et al. (1996) <doi:10.4315/0362-028X-59.9.944>.
- A dynamic approach to predicting bacterial growth in food
- A Flexible Growth Function for Empirical Use
- A modified Weibull model for bacterial inactivation
- An Unexpected Correlation between Cardinal Temperatures of Microbial Growth Highlighted by a New Model
- Convenient Model To Describe the Combined Effects of Temperature and pH on Microbial Growth
- Differential growth of Listeria monocytogenes at 4 and 8°C: Consequences for the Shelf Life of Chilled Products
- GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves
- Growth Kinetics and Model Comparison of Cronobacter sakazakii in Reconstituted Powdered Infant Formula
- Growth kinetics of Listeria monocytogenes and spoilage microorganisms in fresh-cut cantaloupe
- Growth Kinetics of Listeria monocytogenes in Broth and Beef Frankfurters—Determination of Lag Phase Duration and Exponential Growth Rate under Isothermal Conditions
- Mathematics of predictive food microbiology
- Modeling of the Bacterial Growth Curve
- On calculating sterility in thermal and non-thermal preservation methods
- On calculating sterility in thermal preservation methods: application of the Weibull frequency distribution model
- On the use of the Weibull model to describe thermal inactivation of microbial vegetative cells
- Optimization of a new mathematical model for bacterial growth
- Thermal inactivation of Listeria monocytogenes in ground beef under isothermal and dynamic temperature conditions
- When is simple good enough: a comparison of the Gompertz, Baranyi, and three-phase linear models for fitting bacterial growth curves
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