prepR4pcm

MaRDI QIDQ7370397CRANFDO

Authors Shinichi Nakagawa, Malgorzata Lagisz, Santiago Ortega, Ayumi Mizuno, Eduardo S.A. Santos, Bhavya Jain, Jimuel Jr Celeste, Sergio Poo Hernandez

Last update 18 September 2026

Copyright license MIT license, File License

Software version identifier PACKAGES.rds, 1.0.0, 1.0.2, 1.0.3

Description

Reconcile species names across datasets and phylogenetic trees for comparative biology workflows. Identifies mismatches due to formatting differences, taxonomic synonymy, and spelling errors. Produces detailed reports documenting how each name was resolved, which taxonomic authority was used, and what remains unresolved. Supports exact matching, name normalisation, synonym resolution via local taxonomic databases, and fuzzy matching for likely typos. Detects taxonomic splits and lumps. For methodological context, see Nakagawa et al. (2026) <doi:10.32942/X2468Z>.

Cites work

• prepR4pcm: An R Package for Preparing Data and Trees for Phylo- genetic Comparative Methods

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