Primer to analysis of genomic data using R

DOI10.1007/978-3-319-14475-7MaRDI QIDQ5256471zbMATH OpenOpenAlexFDO

Authors Cedric Gondro

Publication date 17 June 2015

Published in Use R! (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-14475-7

zbMATH Keywords

differential expressionfamily-based associationgene expression analysisgene ontologygenetic architecturegenome-wide association studymarker association testpathway analysispopulation geneticsRNAseqsingle nucleotide polymorphism

Mathematics Subject Classification ID

Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01) Software, source code, etc. for problems pertaining to biology (92-04) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
• Applied Statistical Genetics with R
• Statistical genomics. Methods and protocols
• Handbook of Statistical Genomics
• Using R for data management, statistical analysis, and graphics.

Cited in

(4)

• Scalable genomics with \texttt{R} and bioconductor
• Statistical genomics. Methods and protocols
• Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
• Big Data Analytics in Oncology with R

Describes a project that uses

Uses Software

• R
• Snow
• Bioconductor
• faraway
• pegas
• Rcpp
• RGraphics
• rehh
• ShortRead
• snpQC

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