Probabilistic modeling and analysis of DNA fragmentation

DOI10.1142/S0218339019500128MaRDI QIDQ5230443zbMATH OpenOpenAlexWikidataFDO

Authors Reza Pourmohammadi, J. Abouei, Alagan Anpalagan

Publication date 22 August 2019

Published in Journal of Biological Systems (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0218339019500128

zbMATH Keywords

coverage probabilitycoverage problemrandom DNA fragmentationshotgun sequencing

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• Information Theory of DNA Shotgun Sequencing
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• The sum and difference of two lognormal random variables

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(6)

• Some probability distributions in modelling DNA replication
• Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
• Random Covering of Multiple One-Dimensional Domains with an Application to DNA Sequencing
• Length distribution of sequencing by synthesis: fixed flow cycle model
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• Error analysis of the PacBio sequencing CCS reads

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Uses Software

• PBSIM

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