Protein folding simulations and structure predictions

DOI10.1016/S0010-4655(01)00316-2MaRDI QIDQ5956308zbMATH OpenOpenAlexWikidataFDO

Authors Yuko Okamoto

Publication date 27 May 2002

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0010-4655(01)00316-2

zbMATH Keywords

generalized-ensemble algorithmsproteinssimulations

Mathematics Subject Classification ID

Statistical mechanics of random media, disordered materials (including liquid crystals and spin glasses) (82D30) Statistical mechanics of polymers (82D60)

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Cites work

• Optimization by simulated annealing

Cited in

(21)

• Strategies for protein folding and design
• Generalized-ensemble simulations of spin systems and protein systems
• Protein folding disorders: toward a basic biological paradigm
• Modeling and predicting all- transmembrane proteins including helix-helix pairing
• Methods to predict protein spatial structure
• Multicanonical jump walk annealing assisted by tabu for dynamic optimization of chemical engineering processes
• A robust approach to protein foldability measures based on spin-glass models.
• Golden ratio simulated annealing for protein folding problem
• New algorithms and the physics of protein folding
• FROM STRUCTURE AND FUNCTION OF PROTEINS TOWARDIN SILICOBIOLOGY
• Spin analogues of proteins: scaling of `folding' properties
• scientific article; zbMATH DE number 1754715 (Why is no real title available?)
• scientific article; zbMATH DE number 1931084 (Why is no real title available?)
• scientific article; zbMATH DE number 2109043 (Why is no real title available?)
• scientific article; zbMATH DE number 2116053 (Why is no real title available?)
• A COMBINATION OF REPLICA EXCHANGE MONTE CARLO AND ENERGY LANDSCAPE PAVING ALGORITHMS TO INCREASE THE EFFECTIVENESS OF CONFORMATIONAL SAMPLING
• Free-energy calculations in protein folding by generalized-ensemble algorithms
• Monte Carlo simulations of systems with complex energy landscapes
• Generalized ensemble simulations for complex systems
• Generalized ensemble techniques and protein folding simulations
• Computational methods for protein structure prediction and modeling. Volume 2: Structure prediction

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