How liquid is biological signalling?

DOI10.1016/J.TCS.2008.10.037zbMATH Open1158.92321OpenAlexW2078983054MaRDI QIDQ1007238FDOQ1007238

Authors Vincent Danos, Linus J. Schumacher

Publication date 20 March 2009

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://www.pure.ed.ac.uk/ws/files/16869896/How_liquid_is_biological_signalling.pdf

zbMATH Keywords

phase transitionprotein networksprotein domains

Mathematics Subject Classification ID

Applications of graph theory (05C90) Computing methodologies and applications (68U99) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Random graphs (graph-theoretic aspects) (05C80)

Recommendations

• Dynamic properties of cell-cycle and life-cycle networks in budding yeast
• Proteomic waves in networks of transcriptional regulators
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• Statistical mechanics of tuned cell signalling: sensitive collective response by synthetic biological circuits
• Signal propagation in small-world biological networks with weak noise

Cites work

• A simple model of global cascades on random networks
• Abstract Interpretation of Cellular Signalling Networks
• Markov Chains
• Probability with Martingales
• Rule-Based Modelling of Cellular Signalling
• Rule-Based Modelling, Symmetries, Refinements
• The phase transition in inhomogeneous random graphs

Cited in

(1)

• Cooperative assembly systems

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