A grammatical approach to RNA-RNA interaction prediction

DOI10.1016/J.PATCOG.2008.08.004MaRDI QIDQ1013373zbMATH OpenOpenAlexFDO

Authors Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki

Publication date 17 April 2009

Published in Pattern Recognition (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.patcog.2008.08.004

zbMATH Keywords

RNA-RNA interactionjoint secondary structurekissing hairpinmultiple context-free grammar

Mathematics Subject Classification ID

Pattern recognition, speech recognition (68T10) Grammars and rewriting systems (68Q42)

Recommendations

• Applying length-dependent stochastic context-free grammars to RNA secondary structure prediction
• A heuristic approach to RNA-RNA interaction prediction
• Research in Computational Molecular Biology
• Combinatorial analysis of interacting RNA molecules
• A combinatorial approach for multiple RNA interaction: formulations, approximations, and heuristics

Cites work

• Algorithms for Loop Matchings
• Biological Sequence Analysis
• Classifying RNA pseudoknotted structures
• On multiple context-free grammars
• Research in Computational Molecular Biology
• Tree adjoining grammars for RNA structure prediction

Cited in

(6)

• BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy.
• RNA family classification using the conditional random fields model
• Protein Motif Prediction by Grammatical Inference
• Using temperature effects to predict the interactions between two RNAs
• Applying length-dependent stochastic context-free grammars to RNA secondary structure prediction
• A heuristic approach to RNA-RNA interaction prediction

Describes a project that uses

Uses Software

• Mfold

This page was built for publication: A grammatical approach to RNA-RNA interaction prediction

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1013373)