A grammatical approach to RNA-RNA interaction prediction

DOI10.1016/J.PATCOG.2008.08.004zbMATH Open1178.68302OpenAlexW2051944221MaRDI QIDQ1013373FDOQ1013373

Authors: Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki 

Publication date: 17 April 2009

Published in: Pattern Recognition (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.patcog.2008.08.004

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zbMATH Keywords

RNA-RNA interactionjoint secondary structurekissing hairpinmultiple context-free grammar

Mathematics Subject Classification ID

Pattern recognition, speech recognition (68T10) Grammars and rewriting systems (68Q42)

Cites Work

• Biological Sequence Analysis
• Tree adjoining grammars for RNA structure prediction
• Research in Computational Molecular Biology
• On multiple context-free grammars
• Classifying RNA pseudoknotted structures
• Algorithms for Loop Matchings

Cited In (6)

• RNA family classification using the conditional random fields model
• Protein Motif Prediction by Grammatical Inference
• Using temperature effects to predict the interactions between two RNAs
• Applying length-dependent stochastic context-free grammars to RNA secondary structure prediction
• A heuristic approach to RNA-RNA interaction prediction
• BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy.

Uses Software

• Mfold

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